Index

A

abs_path() (pyjacket.filetools.FileManager method) absorb_probabilities() (in module pyjacket.graphtools.absorbing_markov) add() (pyjacket.core.PositiveCounter method) (pyjacket.PositiveCounter method) all_same() (in module pyjacket) (in module pyjacket.core)

apply_mask_greyscale() (in module pyjacket.cvtools.color_filter) apply_mask_hsv() (in module pyjacket.cvtools.color_filter) apply_mask_rgb() (in module pyjacket.cvtools.color_filter) apply_to_columns() (in module pyjacket.core) apply_to_rows() (in module pyjacket.core)

B

batched() (in module pyjacket) (in module pyjacket.core)

bits() (in module pyjacket.arrtools)

C

classify_states() (in module pyjacket.graphtools.absorbing_markov) close() (pyjacket.filetools.image.image.ImageHandle method) (pyjacket.filetools.image.ImageHandle method) (pyjacket.filetools.image.models.ImageHandle method) color_picker_hsv() (in module pyjacket.cvtools.color_picker) color_picker_rgb() (in module pyjacket.cvtools.color_picker) complement() (in module pyjacket.dna.main) convolve() (in module pyjacket.graphtools.grid) (in module pyjacket.graphtools.skeleton)

copy() (pyjacket.core.Counter method) (pyjacket.filetools.image.image.ImageHandle method) (pyjacket.filetools.image.ImageHandle method) (pyjacket.filetools.image.models.ImageHandle method) Counter (class in pyjacket.core) critical_points() (in module pyjacket.graphtools.skeleton) cyclic_shifts() (in module pyjacket) (in module pyjacket.core)

D

delete() (pyjacket.filetools.FileManager method) description (pyjacket.filetools.image.image.Metadata property) (pyjacket.filetools.image.Metadata property) (pyjacket.filetools.image.models.Metadata property) df_apply() (in module pyjacket.core) digits() (in module pyjacket) (in module pyjacket.core) (in module pyjacket.ntheory.modulo.modular_arithmetic)

dst_folder (pyjacket.filetools.FileManager property) dst_path() (pyjacket.filetools.FileManager method) dtype (pyjacket.filetools.image.image.Metadata property) (pyjacket.filetools.image.Metadata property) (pyjacket.filetools.image.models.Metadata property)

E

elements() (pyjacket.core.Counter method) ensure_endswith() (in module pyjacket.string) (pyjacket.filetools.FileManager static method) ensure_exists() (pyjacket.filetools.FileManager static method) exif (pyjacket.filetools.image.image.Metadata attribute) (pyjacket.filetools.image.Metadata attribute) (pyjacket.filetools.image.models.Metadata attribute) exif_value() (pyjacket.filetools.image.image.Metadata method) (pyjacket.filetools.image.Metadata method) (pyjacket.filetools.image.models.Metadata method)

ExifTag (class in pyjacket.filetools.image.models) exists() (pyjacket.filetools.FileManager method) expected_visits() (in module pyjacket.graphtools.absorbing_markov) explode() (pyjacket.filetools.FileManager static method) extend_modulo() (in module pyjacket.core) extend_num() (in module pyjacket) (in module pyjacket.core) extend_str() (in module pyjacket) (in module pyjacket.core)

F

FileManager (class in pyjacket.filetools) FileType (class in pyjacket.filetools.image.image) filterfalse (class in pyjacket.core) floor() (in module pyjacket.core)

fractional() (pyjacket.filetools.image.image.Metadata method) (pyjacket.filetools.image.Metadata method) (pyjacket.filetools.image.models.Metadata method) fromkeys() (pyjacket.core.Counter class method)

G

gcd_extended() (in module pyjacket.ntheory.modulo) (in module pyjacket.ntheory.modulo.modular_arithmetic) get() (pyjacket.filetools.image.image.ImageHandle method) (pyjacket.filetools.image.ImageHandle method) (pyjacket.filetools.image.models.ImageHandle method) get_description() (pyjacket.filetools.image.image.Metadata method) (pyjacket.filetools.image.Metadata method) (pyjacket.filetools.image.models.Metadata method)

get_max_shape() (pyjacket.filetools.image.image.ImageHandle method) (pyjacket.filetools.image.ImageHandle method) (pyjacket.filetools.image.models.ImageHandle method) get_resolution() (pyjacket.filetools.image.image.Metadata method) (pyjacket.filetools.image.Metadata method) (pyjacket.filetools.image.models.Metadata method) graph_from_grid() (in module pyjacket.graphtools.grid)

H

handle_extension() (pyjacket.filetools.FileManager static method)

hsv2rgb() (in module pyjacket.cvtools.color_conversion)

I

ImageHandle (class in pyjacket.filetools.image) (class in pyjacket.filetools.image.image) (class in pyjacket.filetools.image.models) ImageReader (class in pyjacket.filetools.image.models) imread() (in module pyjacket.cvtools) imread_nd2() (in module pyjacket.cvtools) imread_tif() (in module pyjacket.cvtools) index_nth() (in module pyjacket) (in module pyjacket.core)

is_absorbing() (in module pyjacket.graphtools.absorbing_markov) is_branch_point() (in module pyjacket.graphtools.skeleton) is_connected() (in module pyjacket.graphtools.markov) is_regular() (in module pyjacket.graphtools.markov) is_transition_matrix() (in module pyjacket.graphtools.markov) isplit() (in module pyjacket) (in module pyjacket.core) iter_dir() (in module pyjacket.filetools.image.image) (pyjacket.filetools.FileManager method)

L

list_dir() (pyjacket.filetools.FileManager method)

log() (in module pyjacket.core)

M

max_shortest_path() (in module pyjacket.graphtools.shortest_path) merge_channels() (in module pyjacket.cvtools.color_conversion) Metadata (class in pyjacket.filetools.image) (class in pyjacket.filetools.image.image) (class in pyjacket.filetools.image.models) modular_inverse() (in module pyjacket.ntheory.modulo) (in module pyjacket.ntheory.modulo.modular_arithmetic) modular_pow() (in module pyjacket.ntheory.modulo) (in module pyjacket.ntheory.modulo.modular_arithmetic) modular_prod() (in module pyjacket.ntheory.modulo) (in module pyjacket.ntheory.modulo.modular_arithmetic) modular_sum() (in module pyjacket.ntheory.modulo) (in module pyjacket.ntheory.modulo.modular_arithmetic) module pyjacket pyjacket.arrtools pyjacket.core pyjacket.cvtools pyjacket.cvtools.color_conversion pyjacket.cvtools.color_filter pyjacket.cvtools.color_picker pyjacket.cvtools.color_slicing pyjacket.dna pyjacket.dna.main pyjacket.filetools pyjacket.filetools.image pyjacket.filetools.image.image pyjacket.filetools.image.models pyjacket.geometry pyjacket.geometry.spacing pyjacket.graphtools pyjacket.graphtools.absorbing_markov pyjacket.graphtools.grid pyjacket.graphtools.markov pyjacket.graphtools.shortest_path pyjacket.graphtools.skeleton pyjacket.ntheory.modulo pyjacket.ntheory.modulo.modular_arithmetic pyjacket.plottools pyjacket.string

most_common() (pyjacket.core.Counter method)

N

n_step_transitions() (in module pyjacket.graphtools.markov) name (pyjacket.filetools.image.models.ExifTag attribute) ndim (pyjacket.filetools.image.image.ImageHandle property) (pyjacket.filetools.image.ImageHandle property) (pyjacket.filetools.image.models.ImageHandle property)

neighbor_positions() (in module pyjacket.graphtools.grid)

O

oom() (in module pyjacket) (in module pyjacket.core) open() (pyjacket.filetools.image.image.ImageHandle method) (pyjacket.filetools.image.ImageHandle method) (pyjacket.filetools.image.models.ImageHandle method)

operator (pyjacket.filetools.image.image.ImageHandle attribute) (pyjacket.filetools.image.ImageHandle attribute) (pyjacket.filetools.image.models.ImageHandle attribute)

P

partition() (in module pyjacket) (in module pyjacket.core) pick_slice_hsv() (in module pyjacket.cvtools.color_slicing) pick_slice_rgb() (in module pyjacket.cvtools.color_slicing) PositiveCounter (class in pyjacket) (class in pyjacket.core) prod_modulo() (in module pyjacket.core) pyjacket module pyjacket.arrtools module pyjacket.core module pyjacket.cvtools module pyjacket.cvtools.color_conversion module pyjacket.cvtools.color_filter module pyjacket.cvtools.color_picker module pyjacket.cvtools.color_slicing module pyjacket.dna module pyjacket.dna.main module pyjacket.filetools module

pyjacket.filetools.image module pyjacket.filetools.image.image module pyjacket.filetools.image.models module pyjacket.geometry module pyjacket.geometry.spacing module pyjacket.graphtools module pyjacket.graphtools.absorbing_markov module pyjacket.graphtools.grid module pyjacket.graphtools.markov module pyjacket.graphtools.shortest_path module pyjacket.graphtools.skeleton module pyjacket.ntheory.modulo module pyjacket.ntheory.modulo.modular_arithmetic module pyjacket.plottools module pyjacket.string module

R

read() (pyjacket.filetools.FileManager method) (pyjacket.filetools.image.image.FileType method) (pyjacket.filetools.image.image.Metadata method) (pyjacket.filetools.image.Metadata method) (pyjacket.filetools.image.models.ImageReader method) (pyjacket.filetools.image.models.Metadata method) read_before() (pyjacket.filetools.FileManager method) read_csv() (pyjacket.filetools.FileManager method) read_img() (in module pyjacket.filetools.image) (in module pyjacket.filetools.image.image) (pyjacket.filetools.FileManager method) read_img_meta() (in module pyjacket.filetools.image) (in module pyjacket.filetools.image.image) (pyjacket.filetools.FileManager method) read_json() (pyjacket.filetools.FileManager method) read_lazy() (pyjacket.filetools.image.image.FileType method) (pyjacket.filetools.image.models.ImageReader method)

read_meta() (pyjacket.filetools.image.image.FileType method) (pyjacket.filetools.image.models.ImageReader method) read_pickle() (pyjacket.filetools.FileManager method) read_txt() (pyjacket.filetools.FileManager method) remove() (pyjacket.core.PositiveCounter method) (pyjacket.PositiveCounter method) rescale() (in module pyjacket.arrtools) resolution (pyjacket.filetools.image.image.Metadata property) (pyjacket.filetools.image.Metadata property) (pyjacket.filetools.image.models.Metadata property) rev() (in module pyjacket.dna.main) revcom() (in module pyjacket.dna.main) rgb2hsv() (in module pyjacket.cvtools.color_conversion) round_significant() (in module pyjacket) (in module pyjacket.core)

S

savefig() (pyjacket.filetools.FileManager method) seq_read() (pyjacket.filetools.image.image.FileType method) (pyjacket.filetools.image.models.ImageReader method) seq_read_lazy() (pyjacket.filetools.image.image.FileType method) (pyjacket.filetools.image.models.ImageReader method) shape (pyjacket.filetools.image.image.ImageHandle property) (pyjacket.filetools.image.image.Metadata property) (pyjacket.filetools.image.ImageHandle property) (pyjacket.filetools.image.Metadata property) (pyjacket.filetools.image.models.ImageHandle property) (pyjacket.filetools.image.models.Metadata property) shape_um (pyjacket.filetools.image.image.Metadata property) (pyjacket.filetools.image.Metadata property) (pyjacket.filetools.image.models.Metadata property) sign() (in module pyjacket) (in module pyjacket.core) slice_absorbing() (in module pyjacket.graphtools.absorbing_markov) slice_length() (in module pyjacket.filetools.image.models) slices (pyjacket.filetools.image.image.ImageHandle attribute) (pyjacket.filetools.image.ImageHandle attribute) (pyjacket.filetools.image.models.ImageHandle attribute)

sliding_window() (in module pyjacket) (in module pyjacket.core) sortby() (in module pyjacket) (in module pyjacket.core) space_around() (in module pyjacket.geometry.spacing) space_between() (in module pyjacket.geometry.spacing) space_evenly() (in module pyjacket.geometry.spacing) src_folder (pyjacket.filetools.FileManager property) src_path() (pyjacket.filetools.FileManager method) state_probabilities() (in module pyjacket.graphtools.markov) style (class in pyjacket.plottools) sub() (pyjacket.core.PositiveCounter method) (pyjacket.PositiveCounter method) subtract() (pyjacket.core.Counter method) sum_modulo() (in module pyjacket.core) sumprod() (in module pyjacket) (in module pyjacket.core)

T

total() (pyjacket.core.Counter method) truncate_modulo() (in module pyjacket.core) truncate_num() (in module pyjacket) (in module pyjacket.core)

truncate_significant() (in module pyjacket) (in module pyjacket.core) truncate_str() (in module pyjacket) (in module pyjacket.core)

U

update() (pyjacket.core.Counter method)

use() (pyjacket.plottools.style class method)

V

value (pyjacket.filetools.image.models.ExifTag attribute)

W

walk() (pyjacket.filetools.FileManager method) write() (pyjacket.filetools.FileManager method) (pyjacket.filetools.image.image.FileType method) (pyjacket.filetools.image.models.ImageReader method) write_after() (pyjacket.filetools.FileManager method) write_before() (pyjacket.filetools.FileManager method) write_csv() (pyjacket.filetools.FileManager method)

write_img() (in module pyjacket.filetools.image) (in module pyjacket.filetools.image.image) (pyjacket.filetools.FileManager method) write_json() (pyjacket.filetools.FileManager method) write_lazy() (pyjacket.filetools.image.image.FileType method) (pyjacket.filetools.image.models.ImageReader method) write_pickle() (pyjacket.filetools.FileManager method) write_txt() (pyjacket.filetools.FileManager method)

Z

zip_longest (class in pyjacket.core)